ecd85d73b37526ec926f102b726f62bb *DESCRIPTION
3aaff5bc329f5ee26cd2669681c035d8 *NAMESPACE
7880b24ee037d4f6b198ab65db81d528 *NEWS
0ad43a7154149e0f7246da59659a04bf *R/allauc.R
66c5c9cbe54ae9f2acc4e991466dbf10 *R/attenuation.R
03f42420cdc3d5d13655df2404ddc8f8 *R/averageandfilterexprs.R
b8d83f2388f690d1c99133f2aecc4654 *R/countna.R
022e36f10cc4ca293475d63a5be5bfad *R/genesECDF.R
06df783aef2d7225f61169019c7b7797 *R/kneeid.R
4dfb2e9d2f7949e854f35feb95064ce8 *R/meandifference.R
475755181de4d770b57c0c2aa1c14b61 *R/plotauc.R
d80517d2310f9d85d2604d2b0a5fd9af *R/plotecdf.R
6a6e7a96c58d545a84e68deecbbcacaf *R/plothistoknee.R
4c3a036ff9cab073ea6d719d9445d50e *R/plotmetagenes.R
ced9192ac28b034247f47fdf48a9ecb3 *R/plotmulti.R
e3680609a8c3c789d4668ead53d75053 *R/preprocessing-blacklisthighmap-utils.R
b7ea764fdf352a4d4fffbb21d15283ac *R/preprocessing-blacklisthighmap.R
a83116f3e6b5d4a281ef3e0bfac881b0 *R/preprocessing-createtablescores.R
3a048e88dbe927dbea13558983ad5d81 *R/preprocessing-makewindows.R
65936691f7c4ccfaf7b6b9736eef07c4 *R/preprocessing-retrieveanno.R
784ca53ed63f4c2109b982ff10630172 *R/preprocessing.R
efb5e52a5e34683719a107a19d6adf56 *R/tepr.R
8e4ce4b3c32e46e9aaa10438987a95bc *R/universegroup.R
5026f76d5dee496b692bd3fe9a7441b7 *R/utils.R
d248d436b11ff17dd951b707a8e541b2 *build/vignette.rds
372636a17b46d3d084fdc2e4144f2320 *inst/doc/tepr.R
bcde078080669aecffa465e7de85eec7 *inst/doc/tepr.Rmd
b63d050f755c10730452e422ef2a5b6e *inst/doc/tepr.html
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dfc2eb4ff1897fdf8c00e92e518d0540 *inst/extdata/AUCcompare_pval.png
9e4c0f212208a6b1d335499eefccb447 *inst/extdata/EGFR.png
a13d9efe7cd63db1ecea1825cf2cbf93 *inst/extdata/allannobed.rds
f855de43170eae2732765c2d21f7bf42 *inst/extdata/allauc.rds
d648a695484a7f57cc1cf4957a611f26 *inst/extdata/allwindowsbed.rds
d1f50a3e5948ce0fef38df5c8f9cbde5 *inst/extdata/attenuation.rds
75a840144a4a53f3f60c69ee1aeebec5 *inst/extdata/averageandfilterexprs.rds
f7644e3dfa9b9604aedf29102a7ce524 *inst/extdata/chromtabtest.rds
37ce12244aa6cb4b24270b8b27c63824 *inst/extdata/countna.rds
a12a4f9feae60e22f494418ecdbbbe15 *inst/extdata/ctrl_rep1_chr13.forward.bg
379516516e25482f046f9616c4bec67d *inst/extdata/ctrl_rep1_chr13.reverse.bg
01e63dd761faa12e1bf5fb00ea3433a7 *inst/extdata/cugusi_6.tsv
fab98d076ff0a1e0bd1ba48acbebb1e1 *inst/extdata/exptab-preprocessing.csv
df365f3f9ed7c7b49ff52588ba0f57df *inst/extdata/exptab.csv
72f60846c3327e2ec8de291a2ce0a4fa *inst/extdata/finaltab-chr13.tsv
6b59c8cbfa4502c57e0a96885d6ea43e *inst/extdata/finaltab.rds
11e69e4daf51361f1f895cf55294e5da *inst/extdata/gencode-chr13.gtf
34632c4d5548e4060a93aa63dff03944 *inst/extdata/genesecdf.rds
44a6144f790c7e0367b231e4cbc01a50 *inst/extdata/hg38-blacklist-chr13.v2.bed
f54de5c4a873e368a18e43f262207256 *inst/extdata/histo_kb.png
6139ac127473df0c6b36bc05e647200e *inst/extdata/histo_percent.png
069863055e9e72cbfb0f38504c06ab7f *inst/extdata/k50.umap.chr13.hg38.0.8.bed
f06c69679a69a4d2d2a45e67b61b6d89 *inst/extdata/kneeid.rds
ec70606c7581f603d892113d71e9a939 *inst/extdata/meandiff.rds
fa858fc79240095251837ac51f98f076 *inst/extdata/metagene_attenuation.png
959e52cbee812f4271596699096d59c7 *inst/extdata/structure.png
db662961f9267aac4c2ba255864bff9a *inst/extdata/tepr.rds
73b4f7c8d850449450bf2b1a269cb49a *inst/extdata/universegroup.rds
d2ab2766685ba22ecb975a939c019ea7 *man/allauc.Rd
dd6bb64708cced01faa86610a1c7d08b *man/attenuation.Rd
c31b6f78acdf4d45d198661e21abc4a0 *man/averageandfilterexprs.Rd
5b7dc13073219d5ea11dfe05b6d41f01 *man/blacklisthighmap.Rd
3ad2b7058101a3ba020378af735471cd *man/checkexptab.Rd
bec2dbcbae1c82d7bbc0c5a85aacc298 *man/countna.Rd
7c2d8382b0af5f7a4c22526874728364 *man/createtablescores.Rd
3867d67b8b3471497b308fe9dcfd6c31 *man/genesECDF.Rd
1ab36ff3b88b76583474303fdf1fcb94 *man/kneeallconds.Rd
35ac5f3e45238ada595b886797f09e0d *man/kneeid.Rd
501b6e59c5adfb91787509f4c74b443c *man/makewindows.Rd
2a007958840377abb319b3a2a3d8ca41 *man/meandifference.Rd
38022c5b0eaa554d62e85f1e23b3fe74 *man/plotauc.Rd
51f1450a03bf1a60a7c3eeeba481b6ea *man/plotecdf.Rd
397e5c2bba475d6152085f53dc96a45c *man/plothistoknee.Rd
2b1d0a45216574159e2e4aaba8fe85f0 *man/plotmetagenes.Rd
cb4025277cfb13e6b37528122b916aa2 *man/plotmulti.Rd
ac41920bed90d30f45e45d26e739aaf1 *man/preprocessing.Rd
8aaf4c2dc7883f56b800ec4de0cdb219 *man/retrieveanno.Rd
de9ff365e7fe5b4527a76b0e0a63c792 *man/retrievechrom.Rd
4ab0ab00b7a7843cf3d8431ba438b312 *man/showallcomp.Rd
38f03926efa90a6c2f9a370a3b342a53 *man/tepr.Rd
a2e0426f54e5a99c25ac890d220ccffe *man/teprmulti.Rd
79328a5c884c1ffa7c98c706b4c98262 *man/universegroup.Rd
9d47658ce72d7ff70a069a8d7f5a50d3 *tests/testthat.R
59ca440afd0f0d7633c08c87db61f7f5 *tests/testthat/test-allauc.R
8264faf53a61124cd4abd3038aab17f1 *tests/testthat/test-attenuation.R
f242db3e8b47bddf32ba0e7ecc07ba7a *tests/testthat/test-averageandfilterexprs.R
5cce42588852d37c009de676b583fee6 *tests/testthat/test-checkexptab.R
6a11c633c6aeb8fbcdc7032e666c5306 *tests/testthat/test-countna.R
0a9c10a2d0d2e5ac6d20c71eb2ccf3e2 *tests/testthat/test-genesECDF.R
f2d20bb5b8421e7cc28998ccbfe33168 *tests/testthat/test-kneeid.R
10c39df73b5ea2b6805ca0b2b6a91bd7 *tests/testthat/test-meandifference.R
b419336ddc1e325aa990c7de35bca996 *tests/testthat/test-preprocessing-blacklisthighmap.R
07ba3cb756bad6c85bb093ac58fb2dd1 *tests/testthat/test-preprocessing-createtablescores.R
65502652e8c208ff22115b16dcfa4f8b *tests/testthat/test-preprocessing-makewindows.R
66e1bc58c4a8f5c6419dd1f3fadece90 *tests/testthat/test-preprocessing-retrieveanno.R
9a100cc814ed40995d55c6f61e077e6f *tests/testthat/test-preprocessing.R
025c16486a83dc931bfa60facd254a9c *tests/testthat/test-tepr.R
b1efaa94dfb5f43112aa21f09fa2cef4 *tests/testthat/test-universegroup.R
bcde078080669aecffa465e7de85eec7 *vignettes/tepr.Rmd
