CRAN Package Check Results for Package glioblastomaEHRsData

Last updated on 2025-12-19 21:49:36 CET.

Flavor	Version	T_install	T_check	T_total	Status
r-devel-linux-x86_64-debian-clang	0.1.0	11.58	134.19	145.77	OK
r-devel-linux-x86_64-debian-gcc	0.1.0	8.14	94.92	103.06	ERROR
r-devel-linux-x86_64-fedora-clang	0.1.0	21.00	199.95	220.95	ERROR
r-devel-linux-x86_64-fedora-gcc	0.1.0	20.00	208.92	228.92	OK
r-devel-windows-x86_64	0.1.0	14.00	137.00	151.00	OK
r-patched-linux-x86_64	0.1.0	10.69	121.04	131.73	OK
r-release-linux-x86_64	0.1.0	10.46	120.67	131.13	OK
r-release-macos-arm64	0.1.0				OK
r-release-macos-x86_64	0.1.0	8.00	150.00	158.00	OK
r-release-windows-x86_64	0.1.0	12.00	126.00	138.00	OK
r-oldrel-macos-arm64	0.1.0				OK
r-oldrel-macos-x86_64	0.1.0	8.00	125.00	133.00	OK
r-oldrel-windows-x86_64	0.1.0	16.00	164.00	180.00	OK

Check Details

Version: 0.1.0
Check: tests
Result: ERROR Running ‘testthat.R’ [18s/21s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(glioblastomaEHRsData) > > test_check("glioblastomaEHRsData") Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Saving _problems/test-descriptiveTableMunich2019dataset-12.R processing file: file3636b3320268d7.Rmd output file: file3636b3320268d7.knit.md /usr/bin/pandoc +RTS -K512m -RTS file3636b3320268d7.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output /tmp/RtmpdIcdMv/tables/munich_test_table.html --lua-filter /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rmarkdown/rmarkdown/lua/pagebreak.lua --lua-filter /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rmarkdown/rmarkdown/lua/latex-div.lua --lua-filter /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rmarkdown/rmarkdown/lua/table-classes.lua --embed-resources --standalone --variable bs3=TRUE --section-divs --template /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rmarkdown/rmd/h/default.html --syntax-highlighting=none --variable highlightjs=1 --variable theme=bootstrap --mathjax --variable 'mathjax-url=https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML' --include-in-header /tmp/RtmpdIcdMv/rmarkdown-str3636b346c731a8.html Output created: /tmp/RtmpdIcdMv/tables/munich_test_table.html Saving _problems/test-descriptiveTableTainan2020dataset-12.R processing file: file3636b36ed3346c.Rmd output file: file3636b36ed3346c.knit.md /usr/bin/pandoc +RTS -K512m -RTS file3636b36ed3346c.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output /tmp/RtmpdIcdMv/tables/tainan_test_table.html --lua-filter /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rmarkdown/rmarkdown/lua/pagebreak.lua --lua-filter /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rmarkdown/rmarkdown/lua/latex-div.lua --lua-filter /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rmarkdown/rmarkdown/lua/table-classes.lua --embed-resources --standalone --variable bs3=TRUE --section-divs --template /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rmarkdown/rmd/h/default.html --syntax-highlighting=none --variable highlightjs=1 --variable theme=bootstrap --mathjax --variable 'mathjax-url=https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML' --include-in-header /tmp/RtmpdIcdMv/rmarkdown-str3636b3226255d0.html Output created: /tmp/RtmpdIcdMv/tables/tainan_test_table.html Saving _problems/test-descriptiveTableUtrecht2019dataset-12.R processing file: file3636b3293ac138.Rmd output file: file3636b3293ac138.knit.md /usr/bin/pandoc +RTS -K512m -RTS file3636b3293ac138.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output /tmp/RtmpdIcdMv/tables/utrecht_test_table.html --lua-filter /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rmarkdown/rmarkdown/lua/pagebreak.lua --lua-filter /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rmarkdown/rmarkdown/lua/latex-div.lua --lua-filter /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rmarkdown/rmarkdown/lua/table-classes.lua --embed-resources --standalone --variable bs3=TRUE --section-divs --template /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rmarkdown/rmd/h/default.html --syntax-highlighting=none --variable highlightjs=1 --variable theme=bootstrap --mathjax --variable 'mathjax-url=https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML' --include-in-header /tmp/RtmpdIcdMv/rmarkdown-str3636b366cabc17.html Output created: /tmp/RtmpdIcdMv/tables/utrecht_test_table.html Saving 7 x 7 in image Saving 7 x 7 in image Saving 7 x 7 in image Saving 7 x 7 in image Saving 7 x 7 in image Saving 7 x 7 in image [ FAIL 3 | WARN 1 | SKIP 3 | PASS 102 ] ══ Skipped tests (3) ═══════════════════════════════════════════════════════════ • pandoc not available (3): 'test-descriptiveTableMunich2019dataset.R:27:3', 'test-descriptiveTableTainan2020dataset.R:27:3', 'test-descriptiveTableUtrecht2019dataset.R:27:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-descriptiveTableMunich2019dataset.R:12:3'): descriptiveTableMunich2019dataset(savePath = 'tables/') return a table1 object and save a png file ── Error in ``[.data.table`(grid_data, , `:=`("cell_width", safe_stat(.SD$col_width, FUN = sum, NA_value = NA_real_)), by = "rowspan_group")`: attempt access index 14/14 in VECTOR_ELT Backtrace: ▆ 1. └─glioblastomaEHRsData::descriptiveTableMunich2019dataset(savePath = path) at test-descriptiveTableMunich2019dataset.R:12:3 2. └─glioblastomaEHRsData:::saveTable(...) 3. └─flextable::save_as_image(t1flex(t1), savePath) 4. └─flextable::gen_grob(x, fit = "fixed", just = "center") 5. └─flextable:::get_grid_data(x, autowidths, wrapping) 6. ├─...[] 7. └─data.table:::`[.data.table`(...) ── Error ('test-descriptiveTableTainan2020dataset.R:12:3'): descriptiveTableTainan2020dataset(savePath = 'tables/') return a table1 object and save a png file ── Error in ``[.data.table`(grid_data, , `:=`("cell_width", safe_stat(.SD$col_width, FUN = sum, NA_value = NA_real_)), by = "rowspan_group")`: attempt access index 14/14 in VECTOR_ELT Backtrace: ▆ 1. └─glioblastomaEHRsData::descriptiveTableTainan2020dataset(savePath = path) at test-descriptiveTableTainan2020dataset.R:12:3 2. └─glioblastomaEHRsData:::saveTable(...) 3. └─flextable::save_as_image(t1flex(t1), savePath) 4. └─flextable::gen_grob(x, fit = "fixed", just = "center") 5. └─flextable:::get_grid_data(x, autowidths, wrapping) 6. ├─...[] 7. └─data.table:::`[.data.table`(...) ── Error ('test-descriptiveTableUtrecht2019dataset.R:12:3'): descriptiveTableUtrecht2019dataset(savePath = 'tables/') return a table1 object and save a png file ── Error in ``[.data.table`(grid_data, , `:=`("cell_width", safe_stat(.SD$col_width, FUN = sum, NA_value = NA_real_)), by = "rowspan_group")`: attempt access index 14/14 in VECTOR_ELT Backtrace: ▆ 1. └─glioblastomaEHRsData::descriptiveTableUtrecht2019dataset(savePath = path) at test-descriptiveTableUtrecht2019dataset.R:12:3 2. └─glioblastomaEHRsData:::saveTable(...) 3. └─flextable::save_as_image(t1flex(t1), savePath) 4. └─flextable::gen_grob(x, fit = "fixed", just = "center") 5. └─flextable:::get_grid_data(x, autowidths, wrapping) 6. ├─...[] 7. └─data.table:::`[.data.table`(...) [ FAIL 3 | WARN 1 | SKIP 3 | PASS 102 ] Error: ! Test failures. Execution halted Flavor: r-devel-linux-x86_64-debian-gcc

Version: 0.1.0
Check: tests
Result: ERROR Running ‘testthat.R’ [45s/50s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(glioblastomaEHRsData) > > test_check("glioblastomaEHRsData") Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Saving _problems/test-descriptiveTableMunich2019dataset-12.R processing file: file226667503e06a3.Rmd output file: file226667503e06a3.knit.md /data/gannet/ripley/bin/pandoc +RTS -K512m -RTS file226667503e06a3.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output /tmp/Rtmpl20zfV/working_dir/RtmpPnmuZW/tables/munich_test_table.html --lua-filter /data/gannet/ripley/R/test-clang/rmarkdown/rmarkdown/lua/pagebreak.lua --lua-filter /data/gannet/ripley/R/test-clang/rmarkdown/rmarkdown/lua/latex-div.lua --lua-filter /data/gannet/ripley/R/test-clang/rmarkdown/rmarkdown/lua/table-classes.lua --embed-resources --standalone --variable bs3=TRUE --section-divs --template /data/gannet/ripley/R/test-clang/rmarkdown/rmd/h/default.html --syntax-highlighting=none --variable highlightjs=1 --variable theme=bootstrap --mathjax --variable 'mathjax-url=https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML' --include-in-header /tmp/Rtmpl20zfV/working_dir/RtmpPnmuZW/rmarkdown-str226667642ad8b3.html Output created: /tmp/Rtmpl20zfV/working_dir/RtmpPnmuZW/tables/munich_test_table.html Saving _problems/test-descriptiveTableTainan2020dataset-12.R processing file: file22666738f6cb4f.Rmd output file: file22666738f6cb4f.knit.md /data/gannet/ripley/bin/pandoc +RTS -K512m -RTS file22666738f6cb4f.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output /tmp/Rtmpl20zfV/working_dir/RtmpPnmuZW/tables/tainan_test_table.html --lua-filter /data/gannet/ripley/R/test-clang/rmarkdown/rmarkdown/lua/pagebreak.lua --lua-filter /data/gannet/ripley/R/test-clang/rmarkdown/rmarkdown/lua/latex-div.lua --lua-filter /data/gannet/ripley/R/test-clang/rmarkdown/rmarkdown/lua/table-classes.lua --embed-resources --standalone --variable bs3=TRUE --section-divs --template /data/gannet/ripley/R/test-clang/rmarkdown/rmd/h/default.html --syntax-highlighting=none --variable highlightjs=1 --variable theme=bootstrap --mathjax --variable 'mathjax-url=https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML' --include-in-header /tmp/Rtmpl20zfV/working_dir/RtmpPnmuZW/rmarkdown-str22666751d207be.html Output created: /tmp/Rtmpl20zfV/working_dir/RtmpPnmuZW/tables/tainan_test_table.html Saving _problems/test-descriptiveTableUtrecht2019dataset-12.R processing file: file2266675a4a00ba.Rmd output file: file2266675a4a00ba.knit.md /data/gannet/ripley/bin/pandoc +RTS -K512m -RTS file2266675a4a00ba.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output /tmp/Rtmpl20zfV/working_dir/RtmpPnmuZW/tables/utrecht_test_table.html --lua-filter /data/gannet/ripley/R/test-clang/rmarkdown/rmarkdown/lua/pagebreak.lua --lua-filter /data/gannet/ripley/R/test-clang/rmarkdown/rmarkdown/lua/latex-div.lua --lua-filter /data/gannet/ripley/R/test-clang/rmarkdown/rmarkdown/lua/table-classes.lua --embed-resources --standalone --variable bs3=TRUE --section-divs --template /data/gannet/ripley/R/test-clang/rmarkdown/rmd/h/default.html --syntax-highlighting=none --variable highlightjs=1 --variable theme=bootstrap --mathjax --variable 'mathjax-url=https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML' --include-in-header /tmp/Rtmpl20zfV/working_dir/RtmpPnmuZW/rmarkdown-str2266674d945c77.html Output created: /tmp/Rtmpl20zfV/working_dir/RtmpPnmuZW/tables/utrecht_test_table.html Saving 7 x 7 in image Saving 7 x 7 in image Saving 7 x 7 in image Saving 7 x 7 in image Saving 7 x 7 in image Saving 7 x 7 in image [ FAIL 3 | WARN 1 | SKIP 3 | PASS 102 ] ══ Skipped tests (3) ═══════════════════════════════════════════════════════════ • pandoc not available (3): 'test-descriptiveTableMunich2019dataset.R:27:3', 'test-descriptiveTableTainan2020dataset.R:27:3', 'test-descriptiveTableUtrecht2019dataset.R:27:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-descriptiveTableMunich2019dataset.R:12:3'): descriptiveTableMunich2019dataset(savePath = 'tables/') return a table1 object and save a png file ── Error in ``[.data.table`(grid_data, , `:=`("cell_width", safe_stat(.SD$col_width, FUN = sum, NA_value = NA_real_)), by = "rowspan_group")`: attempt access index 14/14 in VECTOR_ELT Backtrace: ▆ 1. └─glioblastomaEHRsData::descriptiveTableMunich2019dataset(savePath = path) at test-descriptiveTableMunich2019dataset.R:12:3 2. └─glioblastomaEHRsData:::saveTable(...) 3. └─flextable::save_as_image(t1flex(t1), savePath) 4. └─flextable::gen_grob(x, fit = "fixed", just = "center") 5. └─flextable:::get_grid_data(x, autowidths, wrapping) 6. ├─...[] 7. └─data.table:::`[.data.table`(...) ── Error ('test-descriptiveTableTainan2020dataset.R:12:3'): descriptiveTableTainan2020dataset(savePath = 'tables/') return a table1 object and save a png file ── Error in ``[.data.table`(grid_data, , `:=`("cell_width", safe_stat(.SD$col_width, FUN = sum, NA_value = NA_real_)), by = "rowspan_group")`: attempt access index 14/14 in VECTOR_ELT Backtrace: ▆ 1. └─glioblastomaEHRsData::descriptiveTableTainan2020dataset(savePath = path) at test-descriptiveTableTainan2020dataset.R:12:3 2. └─glioblastomaEHRsData:::saveTable(...) 3. └─flextable::save_as_image(t1flex(t1), savePath) 4. └─flextable::gen_grob(x, fit = "fixed", just = "center") 5. └─flextable:::get_grid_data(x, autowidths, wrapping) 6. ├─...[] 7. └─data.table:::`[.data.table`(...) ── Error ('test-descriptiveTableUtrecht2019dataset.R:12:3'): descriptiveTableUtrecht2019dataset(savePath = 'tables/') return a table1 object and save a png file ── Error in ``[.data.table`(grid_data, , `:=`("cell_width", safe_stat(.SD$col_width, FUN = sum, NA_value = NA_real_)), by = "rowspan_group")`: attempt access index 14/14 in VECTOR_ELT Backtrace: ▆ 1. └─glioblastomaEHRsData::descriptiveTableUtrecht2019dataset(savePath = path) at test-descriptiveTableUtrecht2019dataset.R:12:3 2. └─glioblastomaEHRsData:::saveTable(...) 3. └─flextable::save_as_image(t1flex(t1), savePath) 4. └─flextable::gen_grob(x, fit = "fixed", just = "center") 5. └─flextable:::get_grid_data(x, autowidths, wrapping) 6. ├─...[] 7. └─data.table:::`[.data.table`(...) [ FAIL 3 | WARN 1 | SKIP 3 | PASS 102 ] Error: ! Test failures. Execution halted Flavor: r-devel-linux-x86_64-fedora-clang